PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000814G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 555aa    MW: 61264.7 Da    PI: 4.7548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000814G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.52.4e-29169811102
                      CTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  11 edeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                      ed+++++++sw  +  sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll++i+r+k 
  PH01000814G0580  16 EDPATNHVVSWGPDCASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVRGHTNLLKNIRRRKP 98 
                      6899****************************************************999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-441296IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-311696IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-261696IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-281696IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404670IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-105870IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MESSHGGSGG GSSSPEDPAT NHVVSWGPDC ASFVVWNPPD FSRDLLPKYF KHNNFSSFIR  60
QLNTYGFRKI DPERWEFANE DFVRGHTNLL KNIRRRKPVH SHSLQNQING PLAESERREL  120
EDEISMLKYE KSMLVADLQR QIQQQCGINW QMQSLEEKLM LMEQRQKNIV ASLCDILQSR  180
GVVSSSLMET DHFSKKRRAP KIDFFVEEPA VEERTMVTET PSMFPVHPVN ADPLNKMELT  240
FVSLEKFIQR ASCASSEDLD TSPRPALTLG EMQTSPMETN TNLQSSASLH LSLPNVGRVH  300
SSPEVAESPS YVQSPMLPLA EIHGDAHKTT EVDMNSESST ADTSQDETIE TGVSHEPAKV  360
NDLFWERFLT ETPQSCHACG AESERQDADG KTETTEAKDD ALRRLVFSPT AAATPSLPAT  420
TLWPFLDVVR SEGGTAVTSA SLAVLHEVMA LTGSSLPGTA LREVVDAVVN CRFEAGAEAA  480
VLMRMLRPFL DVVRSEEGDA VVPAASLTTL HEVMSPPPPS MRKLVRSREQ ATEPLRDGAP  540
EAGVEEPRVA TEEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-19179620110Heat shock factor protein 1
5hdn_A1e-19179620110Heat shock factor protein 1
5hdn_B1e-19179620110Heat shock factor protein 1
5hdn_C1e-19179620110Heat shock factor protein 1
5hdn_D1e-19179620110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000814G0580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0926550.0FP092655.1 Phyllostachys edulis cDNA clone: bphyem213b03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-160HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A1E5VPP70.0A0A1E5VPP7_9POAL; Heat stress transcription factor A-4d
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-64heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]