PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000814G0820
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 334aa    MW: 36236.5 Da    PI: 8.3525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000814G0820genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.46.8e-095482228
                     --SS-EEEEEEE--TT-SS-EE..EEEE- CS
             WRKY  2 dDgynWrKYGqKevkgsefprs..YYrCt 28
                      D ++WrKYGqK +kgs+++ +  +  Ct
  PH01000814G0820 54 TDSWTWRKYGQKLIKGSPYTPGtpFMNCT 82
                     69***************996432255555 PP
2WRKY45.51.5e-141161542259
                      EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      r+YYrC+s+ gCp+kk++ers+ d  +v++ Y++eHnh 
  PH01000814G0820 116 RAYYRCSSSkGCPAKKQMERSRADLAMVVVSYSSEHNHA 154
                      9******998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.76148156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-244973IPR003657WRKY domain
SuperFamilySSF1182908.11E-75191IPR003657WRKY domain
SMARTSM007742.5E-2053155IPR003657WRKY domain
PfamPF031061.2E-45573IPR003657WRKY domain
PfamPF031068.2E-11115153IPR003657WRKY domain
SuperFamilySSF1182901.83E-10115154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-24116154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGEYGYDGG ATSSPTPPRK AGRRRSARKR VVTVPLADVS GPRSNGVGEG NTPTDSWTWR  60
KYGQKLIKGS PYTPGTPFMN CTVRITIYMH HVRGTFAVRT YITWAAYRLG LVFGRRAYYR  120
CSSSKGCPAK KQMERSRADL AMVVVSYSSE HNHAAKVPRA SQSRQVQKPK PQPVTPEPAE  180
PEGVFGEDAA VDVHDEFRWF YNGVSTSPSE EEGTDEMLYG PMFLDAGAVG TTAPVLLPDE  240
CAGDEGGFGG EGGEEDGLFA GLGELPECAI VFRHQGCLAG GVRSSSRRSA LPHPDQMHAG  300
SIGTYIGRLR LVRNQFRTSE FSSGHTVSWF DSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000814G0820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232262.13e-65probable WRKY transcription factor 65
TrEMBLA0A446NNR67e-68A0A446NNR6_TRITD; Uncharacterized protein
STRINGOPUNC01G29620.12e-66(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-23WRKY DNA-binding protein 65