PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000819G0520

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 290aa MW: 32247.1 Da PI: 8.2526

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000819G0520	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.4	1.9e-30	36	139	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ + PH01000819G0520 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERVRGlGT 129 99*************************9666668889**********************************************9998899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l++ +r+ PH01000819G0520 130 GDLLFIGCRR 139 9888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-40	30	143	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.05E-29	33	127	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.29E-28	35	126	No hit	No description
SMART	SM01019	2.4E-24	36	140	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.93	36	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-28	36	139	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAMNPLSQEH PHAWPWGVAM STNLHYHHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGDSGE KGLLLSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH 120 FERVRGLGTG DLLFIGCRRR GDSAPTAVAP PPAVRVAAAG QNAGERQPWS PMCYSTSGSH 180 PTSPANSHAY RRSADHDHSD MHNHAGESQW DTDTKSCSAA SAPSRRLRLF GVNLDCGPEP 240 EAADTATATA MYGYMHQSPY AAMFPVPSNC AFLLAINRIN AFTSFHLRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-50	31	140	3	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-50	31	140	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000819G0520

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375277	1e-172	AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577828.1	1e-159	B3 domain-containing protein Os11g0156000
Swissprot	Q53QI0	1e-135	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M8CEA1	1e-160	M8CEA1_AEGTA; B3 domain-containing protein
STRING	EMT21501	1e-161	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	1e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]