PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000823G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 205aa    MW: 22209.9 Da    PI: 7.0166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000823G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-2771129259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ve+++ d ++++itY+++H he
  PH01000823G0340  71 ADSWCWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVEKCRYDASLLIITYTSDHSHE 129
                      69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3063129IPR003657WRKY domain
PROSITE profilePS5081127.63465131IPR003657WRKY domain
SuperFamilySSF1182901.96E-2367129IPR003657WRKY domain
SMARTSM007741.9E-3170130IPR003657WRKY domain
PfamPF031062.6E-2272129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPGLASIATP ATRALHGGGK NTRTPVSVAG MTKMNSMGDG SSVPKRRKQD VQKVVVSVKA  60
EDRKAEQGPP ADSWCWRKYG QKPIKGSPHP RGYYKCSSYR GCPARKQVEK CRYDASLLII  120
TYTSDHSHED YATDPVQEQT HNSDKSDGGS ALNIDMSLAE ATAASSKQCG EEETSDFFDE  180
LEELLPLSAS PLPSLAFMVQ EQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-16721291672WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000823G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.13e-85probable WRKY transcription factor 69
TrEMBLQ688Q41e-85Q688Q4_ORYSJ; Putative WRKY transcription factor
STRINGOMERI05G02180.11e-84(Oryza meridionalis)
STRINGORUFI05G02200.21e-84(Oryza rufipogon)
STRINGOBART05G02110.11e-84(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-31WRKY DNA-binding protein 65