PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000823G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 146aa    MW: 16015 Da    PI: 9.0785
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000823G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-142381462
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                      ++ +r+ +NRe+ArrsR+RK++++eeL  +++ L+aeN +  ++++ +  e  k++ e
  PH01000823G0440 23 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVESQIDAYARELGKVDGE 81
                     46789999****************************************99988877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-182084IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.7942285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-112278No hitNo description
PfamPF001703.1E-102476IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-102476No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSSHRSSSPE SGNTDGSGYA ADERKRKRML SNRESARRSR ARKQQRLEEL IAEAARLQAE  60
NARVESQIDA YARELGKVDG ENAVLRARHG ELAGRLQALG GVLEIFQVVG APVDIPEIPD  120
PMLRPWQPPF APQPIAAAAI ADAFQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643RRSRARKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000823G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916110.0FP091611.1 Phyllostachys edulis cDNA clone: bphyst014n11, full insert sequence.
GenBankFP0964290.0FP096429.1 Phyllostachys edulis cDNA clone: bphyst004a03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654003.13e-71PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0E0KY132e-70A0A0E0KY13_ORYPU; Uncharacterized protein
STRINGOPUNC05G01750.13e-71(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-25basic region/leucine zipper motif 53