PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000841G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 311aa    MW: 34458.1 Da    PI: 6.5551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000841G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13158202347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+ +++++ +qlG+g+W+ I++ + ++Rt+ q+ s+ qk+
  PH01000841G0080 158 AWTEVEHRKFLEGLRQLGKGDWRGISKSFVTTRTATQVASHAQKF 202
                      6******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.431151207IPR017930Myb domain
SuperFamilySSF466895.15E-16153207IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-16154206IPR006447Myb domain, plants
SMARTSM007178.0E-9155205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-9158198IPR009057Homeodomain-like
PfamPF002492.6E-10158201IPR001005SANT/Myb domain
CDDcd001671.54E-8158203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPPPFPLTFI SNNDKATGNN LRKLMEQLEV GKKLEAPVLF RLFGVEVRAG DGDEETTLEE  60
EDGFMELMKS SSMPNVTSID PLLQAGEAGD EEATLEEEDG FMELKKSSSM PNLTSIDPLL  120
QPGEAGKGKV YASDDAELAS RQQKRRRRKA HERKKGIAWT EVEHRKFLEG LRQLGKGDWR  180
GISKSFVTTR TATQVASHAQ KFFIRQTNPG KKKRRASLFD VGMADFNYYQ LPNPQSVAIK  240
PAPTQEIIHT DRGDVPAPSY PDAVGLRGNN MQVDELTDYV KRSKVPAEMS ASSLELSIAP  300
PRGAVEAIKV L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148KRRRRK
2143154KRRRRKAHERKK
3144154RRRRKAHERKK
4210214KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000841G0080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1010100.0FP101010.1 Phyllostachys edulis cDNA clone: bphyem122l11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662604.21e-104PREDICTED: transcription factor DIVARICATA-like
SwissprotB8BI932e-93MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC512e-93MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A0A9KKT01e-108A0A0A9KKT0_ARUDO; Uncharacterized protein
STRINGOB10G25700.11e-105(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.18e-34MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]