PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000841G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 313aa    MW: 33904.7 Da    PI: 7.2557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000841G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1390134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  PH01000841G0290  90 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 134
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.5E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.27483139IPR017930Myb domain
SuperFamilySSF466893.96E-1785140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1986138IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-1187133IPR009057Homeodomain-like
SMARTSM007171.0E-1087137IPR001005SANT/Myb domain
CDDcd001675.40E-990135No hitNo description
PfamPF002494.7E-1190134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKIFGVRL TDGSIRKSAS MGNLSLLSAG STSGGASPAD  60
GPDAAADGYA SDDFVQGSSS ASRERKKGVP WTEEEHRRFL LGLQKLGKGD WRGISRNFVV  120
SRTPTQVASH AQKYFIRQAN MSRRKRRSSL FDMVPDESMD LPPLPGSQES EAQVLNQPPL  180
PPPREEEVES MESDISAIAE SSSASAVMPE NLQSSYPVIV PAYFSPFLQF SVPFWQNQKD  240
GDDLGQETHE IVKPVPVHSK SPINVDELVG MSKLSIGESN QETVSTSLSL NLVGGQNRQS  300
AFHANPPTRA QA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000841G0290
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0927340.0FP092734.1 Phyllostachys edulis cDNA clone: bphylf029c02, full insert sequence.
GenBankFP0965050.0FP096505.1 Phyllostachys edulis cDNA clone: bphylf058m17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614288.10.0transcription factor MYBS3
SwissprotQ7XC570.0MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A0E0IWI70.0A0A0E0IWI7_ORYNI; Uncharacterized protein
STRINGPavir.Ia02215.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-73MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]