PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000841G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 261aa    MW: 27595.6 Da    PI: 4.8619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000841G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1889139155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000841G0400  89 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 139
                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1389139IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2190148IPR016177DNA-binding domain
PROSITE profilePS5103223.4290147IPR001471AP2/ERF domain
SMARTSM003803.1E-3590153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3290148IPR001471AP2/ERF domain
PRINTSPR003671.3E-1091102IPR001471AP2/ERF domain
CDDcd000184.92E-3091149No hitNo description
PRINTSPR003671.3E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAPQELQETS SSSSSSTTSS TSSCSSTVTD SSSSPSTPVR ANAAAPAVPR KRRQAAEVEA  60
GGGGGGGGEE EEDAGKTKKR KRSSDGKHPV YRGVRMRAWG KWVSEIREPR KKSRIWLGTF  120
PTAEMAARAH DVAALAIKGR AAHLNFPDLA GVLPRAASPA PKDVQAAAAL AAVFTSPSLS  180
SDQSEKADAA CLVQEEPAPE NPATAPSSGS GEEEEERQLF DLPDLLLDIR TGFGFSTMWA  240
PLPDVEEVNA ELRLEEPLLW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1782147672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000841G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974910.0FP097491.1 Phyllostachys edulis cDNA clone: bphylf042c03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.14e-81ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0E0MAP93e-89A0A0E0MAP9_ORYPU; Uncharacterized protein
STRINGOPUNC10G16830.15e-90(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]