PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000842G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 198aa    MW: 21179.6 Da    PI: 6.935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000842G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-1852102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ykGVr++   grWv+e+r+p   g ++r++lg+f ta++Aa+a++ a+++l+g
  PH01000842G0220  52 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETADMAARAHDVAALALRG 102
                      68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1352102IPR001471AP2/ERF domain
PROSITE profilePS5103221.86553110IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2153111IPR016177DNA-binding domain
SMARTSM003801.2E-2853116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3053112IPR001471AP2/ERF domain
CDDcd000181.68E-2854112No hitNo description
PRINTSPR003675.6E-85465IPR001471AP2/ERF domain
PRINTSPR003675.6E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDVAALSSDY SSGTPSPVAA DVDEGSSSYM TVSSAPPKRR AGRTKFKETR HPVYKGVRRR  60
NPGRWVCEVR EPHGKQRIWL GTFETADMAA RAHDVAALAL RGRSACLNFA DSPRRLRVPP  120
LGAGHDEIRR AAAEAAEAFR PAPDQGNGAA EEAAAAPGAS SSAAQCSGDP FYEVDDRLDF  180
GMQGYLDMAQ GMLIDQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000842G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2254980.0KF225498.1 Chimonobambusa tumidissinoda CRT/DRE binding factor 1 (CBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-100dehydration-responsive element-binding protein 1G
SwissprotQ6EP774e-99DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLV5RFT91e-135V5RFT9_9POAL; CRT/DRE binding factor 1
STRINGOPUNC02G25480.11e-102(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.17e-37dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]