PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000842G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 599aa    MW: 64138 Da    PI: 8.3293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000842G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06111130525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +Cr+f + G C+yG++C+F H
  PH01000842G0310 111 PCRYFVA-GDCSYGEKCRFPH 130
                      7**8888.***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479106133IPR000571Zinc finger, CCCH-type
SMARTSM003560.011108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.91E-5109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4111130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.65E-25137306IPR017986WD40-repeat-containing domain
SMARTSM003202.0E-6137176IPR001680WD40 repeat
PfamPF004001.4E-5140176IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.9E-25140313IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008214.118144185IPR001680WD40 repeat
PROSITE profilePS5029413144185IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM00320220179214IPR001680WD40 repeat
SMARTSM003204.4216253IPR001680WD40 repeat
SMARTSM0032029260297IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.9E-25394395IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM00320190471512IPR001680WD40 repeat
SuperFamilySSF509782.65E-25478553IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.9E-25496549IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP APGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATYK  60
RPNHSGGSGG HVWRNPNSGG GRGRGGGGPN KWGRGPGGAD GGARHKAPDG PCRYFVAGDC  120
SYGEKCRFPH TYCMSDSISL LTPLQGHEKV VTGIALPTGS DKLYSGSKDG TVRMWDCQTG  180
QCAGVINMGH EIGCIISEGP WLFVGIPDAV KVWNVQTQAA MNLTGPTGQV YALAVANELL  240
FAATQDGRIL AWRCSAATNC FEPAASLVGH QLAAVSLVVG AMRLYSGSMD KTIRGFRSSH  300
NLHLVKKTAG GGCQLPWLMA TAACSTDMLL CHLLDSHDGS GIHAPSIPHP APTSGGRRCK  360
LVIKVVAAQR LHAGATHAQL RCDVPWLRGP CLCRFDEIVL TIWEPSAREL TTVWAATESG  420
SLEVTYTHKE EDLIYKLLPL WQENKALRPF YSLYLSASSS FSISLLRGFC FGKAAREFLF  480
SKGALALSGM PDAQSKPVLL CSLNDNTVRL YDLPSFSDRG RIFSKQEIRA IQIGPSGLFF  540
TGDGTGELKP TSPQKLDEVR GGEHEDGVGS MESSEEVGCH AFDRGVKLGV CQCSVRHG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987GGRGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000842G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647681.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLJ3LFU40.0J3LFU4_ORYBR; Uncharacterized protein
STRINGOB02G35110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-98zinc finger WD40 repeat protein 1