PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000855G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 342aa    MW: 36311.8 Da    PI: 10.0815
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000855G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.71.9e-28184241258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkld.eksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p+YVNaKQ+++I++RR +Rak+e e++++ +++rkpylheSRh+hA+rR+RgsgGrF
  PH01000855G0230 184 GPIYVNAKQFNGIIRRRLARAKAEGENRVSrSRHRKPYLHESRHRHAMRRARGSGGRF 241
                      69**************************8426899**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-31181244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.646182244IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22185207IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-28185241IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRSAAAMSFQ EHGLGLQVIT NRGGNGAAAA AMPWWAGVGS QPLLGGESFG QLSHAIMEGS  60
RGVQADHHHI LAAGRQPHRA VDPSRPGPAM PPERRSAAAA GGVVKFPIIS GDSDLGKELK  120
FQEPTVAAYP ALQEYHGRFE LALGQSMVCT NYANADRSYG LYSPYGAQAM HGRMLLPSAI  180
ATEGPIYVNA KQFNGIIRRR LARAKAEGEN RVSRSRHRKP YLHESRHRHA MRRARGSGGR  240
FLNTKSLSGD HGAAGGPPPR SANMSLSSEG PDNNGSKNSG NAGLTASEAT SVYPAQDDMA  300
DFHAMGHLRS PSFFPSLTMD GGGEAKWVTS TPHGCCVDLL KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-18183243261HAPB protein
4g92_A3e-18183243261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225234RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000855G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015660.0FP101566.1 Phyllostachys edulis cDNA clone: bphyem205p17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-101nuclear transcription factor Y subunit A-2
TrEMBLA0A0D9WVN41e-102A0A0D9WVN4_9ORYZ; Uncharacterized protein
STRINGLPERR07G03140.11e-103(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-34nuclear factor Y, subunit A10