PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000878G0020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 285aa MW: 30209.1 Da PI: 10.4005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000878G0020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	115	159	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + +lG+g+W+ I+r++ ++Rt+ q+ s+ qky PH01000878G0020 115 PWTEEEHRMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKY 159 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.68	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.988	108	164	IPR017930	Myb domain
SuperFamily	SSF46689	1.29E-18	109	165	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	111	163	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-11	112	162	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	112	158	IPR009057	Homeodomain-like
CDD	cd00167	6.71E-10	115	160	No hit	No description
Pfam	PF00249	9.2E-12	115	159	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MARKCSSCGN NGHNSRTCSG HRGLENRSGG STTCAGLRLF GVQLQVGSSP LKKCLSMESL 60 SPAAYYGAAA ASNASPSVSS SSSLVSIEES AERVSGGYLS DGLMGRAQER KKGVPWTEEE 120 HRMFLAGLDK LGKGDWRGIS RHFVTTRTPT QVASHAQKYF LRQNSLTQKR RRSSLFDVVE 180 GAKKAAMSRT ASVSELQFPS LSLGVDAAKK EAVLLPPCLN LMSSTSQGGS AGASQSQPPS 240 SLTLNAKPQV HVQMPDLELK MSTSRLSDQS GPSPSTPFLG TIRVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000878G0020

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095913	0.0	FP095913.1 Phyllostachys edulis cDNA clone: bphyst033e20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809031.1	1e-142	transcription factor MYBS3-like
Swissprot	Q7XC57	4e-50	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A3L6T237	1e-142	A0A3L6T237_PANMI; Transcription factor MYB1R1-like
STRING	Pavir.Ca00821.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4231	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-46	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]