PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000890G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 204aa    MW: 20993.9 Da    PI: 11.456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000890G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-201969155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp+    r +r++lg+f+tae Aa+a++aa++ ++g
  PH01000890G0360 19 PRFRGVRKRP-WGRYAAEIRDPT----RkARVWLGTFDTAEAAARAYDAAALHFRG 69
                     689*******.**********84....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-141969IPR001471AP2/ERF domain
CDDcd000181.40E-171979No hitNo description
Gene3DG3DSA:3.30.730.106.7E-322078IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-222078IPR016177DNA-binding domain
PROSITE profilePS5103224.5532077IPR001471AP2/ERF domain
SMARTSM003805.5E-362083IPR001471AP2/ERF domain
PRINTSPR003671.4E-102132IPR001471AP2/ERF domain
PRINTSPR003671.4E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAPKNAPSVA AAVADGMEPR FRGVRKRPWG RYAAEIRDPT RKARVWLGTF DTAEAAARAY  60
DAAALHFRGP KAKTNFPVAY AHVPPPKALA TAVSPSSSTV ESSSPDSPAT APPTAALVAA  120
PSLDLSLGMP VAAQPFLFPD PRFAVTVAVA APVPHRPAVA AGKKALARVE EQSDTGSSSS  180
VVDASPAVGA RRPRRLRSGA SAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2120801475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000890G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933870.0FP093387.1 Phyllostachys edulis cDNA clone: bphylf043h08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976762.16e-64ethylene-responsive transcription factor 4
TrEMBLA0A0E0KV082e-67A0A0E0KV08_ORYPU; Uncharacterized protein
STRINGOPUNC04G22340.14e-68(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-23erf domain protein 9