PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000896G0440

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 324aa MW: 34264.3 Da PI: 8.3994

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000896G0440	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	244.9	3.2e-75	7	323	51	374
GRAS 51 arlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144 +r+a ++ p+++ ++ +e+ a +l+++ sP+++++ +aN a+ + ++++H +Dfd+s + Q +aL+++La R+ + sl++ PH01000896G0440 7 SRIAP-----TASAPSQHLADLCGAEQRAGSQLLHQNSPCFRLALHAANIAVTD----HRTIHLVDFDVSVP-QHAALIHQLAGRRVPGTSLKV 90 44443.....22222233332236666667799**************98765....79******98.99*************** PP GRAS 145 Tgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 T+v +p+s + +l ++gerL+k Ae++g++ +f+v v+ r ++le ++L ++pgEalaVnl+++l +++de+vs +++rde+L+ v+ l PH01000896G0440 91 TAVTDPTSPftqsLTATLPAVGERLKKQAERVGIEYRFEV-VSCRAAELEASKLGCEPGEALAVNLAFALSHVPDETVSPANPRDELLRRVRAL 183 *99888877778899****************9.7999********************************************* PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsl..eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 P+vvv+veqe++ n++++++rf++a+ +y a+++sl +a+l+res +r+ E++ l++++ n+v ega+r er+e ++kWr+rl++aGF+p PH01000896G0440 184 GPQVVVLVEQELNSNTAPLATRFSDACAHYGAILESLdaNATLGRESADRARAEAA-LAKKAANAVGREGADRLERCEVFGKWRARLGMAGFRP 276 *********************************5556699*******9.9******************************** PP GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vp+s +a+q+ + l g v+ e+g l lgW++r ++++SaWr PH01000896G0440 277 VPVSPGIADQVMAGLGLAL-PGLAVKPENGVLRLGWMGRVVTVASAWR 323 ***********9998.9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.949	1	304	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-72	7	323	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVAVLSSRIA PTASAPSQHL ADLCGAEQRA GSQLLHQNSP CFRLALHAAN IAVTDHRTIH 60 LVDFDVSVPQ HAALIHQLAG RRVPGTSLKV TAVTDPTSPF TQSLTATLPA VGERLKKQAE 120 RVGIEYRFEV VSCRAAELEA SKLGCEPGEA LAVNLAFALS HVPDETVSPA NPRDELLRRV 180 RALGPQVVVL VEQELNSNTA PLATRFSDAC AHYGAILESL DANATLGRES ADRARAEAAL 240 AKKAANAVGR EGADRLERCE VFGKWRARLG MAGFRPVPVS PGIADQVMAG LGLALPGLAV 300 KPENGVLRLG WMGRVVTVAS AWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-29	5	323	51	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000896G0440

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP729172	0.0	KP729172.1 Stipa purpurea microsatellite ZH29 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580377.1	1e-180	scarecrow-like protein 8
TrEMBL	A0A3L6Q6Y6	1e-180	A0A3L6Q6Y6_PANMI; Scarecrow-like protein 8
STRING	MLOC_72117.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	7e-76	SCARECROW-like 8