PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000901G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 204aa    MW: 21695.8 Da    PI: 7.0839
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000901G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.59.2e-3647105260
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                      ++++++cprC stntkfCyynnys+sqPr+fC+aCrryWtkGG+lr+vPvGg++r++ +
  PH01000901G0540  47 QQQQIECPRCGSTNTKFCYYNNYSTSQPRHFCRACRRYWTKGGTLRDVPVGGASRRSGN 105
                      7899**************************************************99754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-3249104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.71751105IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-2351102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAPAASLLSA NSVAAASKRP AASDAEPLDS SSPPQGGDQE AARKDQQQQQ IECPRCGSTN  60
TKFCYYNNYS TSQPRHFCRA CRRYWTKGGT LRDVPVGGAS RRSGNKRRRV SAEPSSASPP  120
PTYARAEDAY PDLSTFPFLS DGIFLPQFDL GAAPAAFSWP SAAPDFYDGL APWDDGTRGV  180
GVTGAWDNFT DIVGLSWPPP AGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000901G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952830.0FP095283.1 Phyllostachys edulis cDNA clone: bphyst028i11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824347.17e-74dof zinc finger protein DOF1.6-like
TrEMBLA0A0A9K5581e-90A0A0A9K558_ARUDO; Uncharacterized protein
STRINGOPUNC04G27290.16e-75(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140472427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.19e-29Dof family protein