PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000904G0290

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

YABBY

Protein Properties

Length: 297aa MW: 31058.3 Da PI: 9.0181

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000904G0290	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	78.5	2e-24	37	86	5	54
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++ PH01000904G0290 37 APSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLL 86 579****************************************9987654 PP
2	YABBY	132.3	6.3e-41	189	253	107	170
YABBY 107 eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl PH01000904G0290 189 ATSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 253 5677887769*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.9E-63	38	253	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	191	246	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-4	202	245	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSSTSSAASA AAAFSPEPQL AENQLPAALQ LPPVQAAPSE QLCYVHCHFC DTVLVVSVPS 60 SSLFKTVTVR CGHCSSLLTV NMRGLLFPST PTGTAATTAA VAVTTTTTTA PPPPAAAAQG 120 QHGQFHLPHS LNLEPNPPHH SLLDEISSAN PSLQLLEQHG LGGLIAGAGR TTAPPPPPPP 180 AAPGKGAKAT SPRTNPVVNR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA 240 KNWAHFPHIH FGLMPDHHGL KKTSLLPQDH QRKDGLLKDG LYAAAAAAAA NMGVAPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000904G0290

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091994	0.0	FP091994.1 Phyllostachys edulis cDNA clone: bphyem110b24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982656.1	1e-136	protein YABBY 3
Swissprot	Q8L556	1e-107	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	K4AD31	1e-134	K4AD31_SETIT; Uncharacterized protein
STRING	Si036788m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-43	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]