PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000913G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 195aa    MW: 20995.4 Da    PI: 6.6105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000913G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.1e-136186227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     ++++C+f+++tG Ck+G+ CkF+H++
  PH01000913G0440 61 DQPECQFYMKTGDCKFGAVCKFHHPK 86
                     689*********************96 PP
2zf-CCCH391.3e-12106132127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  PH01000913G0440 106 PGEPVCTFYSRYGICKFGPNCKFDHPM 132
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5115987IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-55986IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-106186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-66289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-56587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99105133IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7105132IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4110130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGSSPDDQQR TPGTTQYYSG SRQSDTTGMG DHGMFPSYQA GSVPVGVYAL QGENVFPERP  60
DQPECQFYMK TGDCKFGAVC KFHHPKERLI PAPNCALSQL GLPLRPGEPV CTFYSRYGIC  120
KFGPNCKFDH PMGALMYGTA TSPTGDVPTM HYQLAPSPGH SDRLLDGGSG RSHRIPQSDS  180
QQIPSGDGST EREA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000913G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576637.11e-126zinc finger CCCH domain-containing protein 66 isoform X2
RefseqXP_010237293.11e-126zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT651e-121C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0Q3IKS41e-124A0A0Q3IKS4_BRADI; Uncharacterized protein
TrEMBLI1IIN51e-124I1IIN5_BRADI; Uncharacterized protein
STRINGBRADI4G08050.11e-125(Brachypodium distachyon)
STRINGPavir.Cb01071.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.37e-55zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]