PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000919G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 1149aa    MW: 128141 Da    PI: 6.7196
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000919G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.82.4e-541222392118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n++ ++++ e++++p+sg+l+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een+++
  PH01000919G0460 122 LKEaQQRWLRPAEICEILKNYRDFHIAPEPPNKPPSGTLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENI 215
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  PH01000919G0460 216 QRRTYWMLEEDFMHIVLVHYLETK 239
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.349118244IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-72121239IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-48124237IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-7569654IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.37E-18570655IPR014756Immunoglobulin E-set
PfamPF018331.2E-7570647IPR002909IPT domain
SuperFamilySSF484031.31E-15761864IPR020683Ankyrin repeat-containing domain
CDDcd002042.43E-12764862No hitNo description
Gene3DG3DSA:1.25.40.201.8E-16764867IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.918770864IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736803835IPR002110Ankyrin repeat
SMARTSM002480.013803832IPR002110Ankyrin repeat
SMARTSM002483200842871IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-89621016IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.4965987IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096966995IPR000048IQ motif, EF-hand binding site
PfamPF006120.031967986IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00229881010IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.569891013IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-49911010IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1149 aa     Download sequence    Send to blast
MAAQPSQGGV APAVVAEVRR QRLDGNRLAG GIKESKREAL EEEIGRKGVK GRCRRERRKK  60
KEERRRARGV KEEWVDEVLL KRIRMQSVRM SGSYRTFRVV ELLGWNLYGK YCRVRKDIEQ  120
ILKEAQQRWL RPAEICEILK NYRDFHIAPE PPNKPPSGTL FLFDRKVLRY FRKDGHNWRK  180
KKDGKTVKEA HERLKSGSID VLHCYYAHGE ENENIQRRTY WMLEEDFMHI VLVHYLETKG  240
GKSSRARGNN DMLQAAVLDS PLSQLPLQTI EGESSLSGQA SEYEEAESVS LIHIPIMHSA  300
SKAKFGAADT YSGGAGYHSF TQMQQHQNGI GPVIDASTFS SYAPASSIGN YQGLQHAMAH  360
NTSFYSSSQD NSPVVLNDSS LGLATNGRES QTDLPSWNEV MKPDKGSVQM PHLQLPVSPE  420
QGTFTEDPGV EYLTFDEVFS DGLSLDDLSA AGADGESFWQ FSSATGDLSA TENSFPQNDG  480
SLEAAIGYPF LKTQSSNLSD VAKDSFKKTD SFTRWMSKEL PEVEDSQIQS SSGAYWNTEE  540
ADSIIEASSR EPLDQFTVAP MLSQDQLFSI VDFSPSWTYT GSKTKVLVTG KFLTNQVTER  600
CKWSCMFGEI EVPAEISADG TLHCYSPPHR PGRVPFYITC SNRLACSEVR EFEFRLSPSQ  660
YMDAPSPHGA TNKVYLQIRL DKLLSLGPDE YQATISNPSL EMIDLSKKIS SLMTNNDEWS  720
KLLKLADDNE LLTGDQQDQF AENLIKEKLH VWLLYKVGDG GKGPSVLDDE GQGILHLAAA  780
LGYDWAIRPT VTAGVNINFR DVHGWTALHW AAFCGRERTV VALIALGAAP GALTDPTPDF  840
PSGSTPADLA SANGYKGISG FLAESSLTSH LQALNMKEAN MAEISGLPGI GDVTERSASQ  900
PAIGDSLGAV RNAAQAAARI YQVFRVQSFQ RKQAVQYEDE KSGISDAHAL SLLSVKPSKP  960
GQFDPLHAAA SRIQNKFRGW KGRKEFLLIR QRIVKIQAHV RGHQVRKHYR KIVWSVGIME  1020
KVILCWRRRG AGLRGFRSAE GAIESSRGGT SSNSITDKPA VDDYDFLQEG RKQTEERLHK  1080
ALARVKSMAQ YPEARDQYQR ILTVVSKIQE SQAMQEKMLE DSAEMDESHF MSEFKELWED  1140
DTPLPGYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRERRKKKE
25661RRKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000919G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234691.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A3L6TUJ20.0A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRINGBRADI3G23800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains