PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000921G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 1668aa    MW: 182882 Da    PI: 5.8952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000921G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-0616471667526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  PH01000921G0370 1647 ICK-FHESGYCRKGASCNYVHP 1667
                       799.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.0E-986146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579039.52E-895146IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.21E-19101146No hitNo description
SMARTSM002491.2E-6101147IPR001965Zinc finger, PHD-type
PROSITE patternPS013590102162IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0011329414IPR019835SWIB domain
SuperFamilySSF475925.23E-21331410IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.9E-26333415IPR003121SWIB/MDM2 domain
PfamPF022011.1E-15336409IPR003121SWIB/MDM2 domain
PROSITE profilePS5136023.856468602IPR004343Plus-3 domain
SMARTSM007192.2E-37468576IPR004343Plus-3 domain
SuperFamilySSF1590426.28E-27469570IPR004343Plus-3 domain
PfamPF031269.9E-20473569IPR004343Plus-3 domain
SuperFamilySSF552772.62E-15745809IPR003169GYF domain
PROSITE profilePS5082914.289756808IPR003169GYF domain
SMARTSM004444.0E-13757810IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.9E-15758809IPR003169GYF domain
PfamPF022131.3E-9759798IPR003169GYF domain
PROSITE profilePS5010313.66616421667IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1668 aa     Download sequence    Send to blast
MEDAAELLSH SEAGCPPELR LPPPSEPPPA QAMGMDDSQF LGSIVGEPAP PQQQTPAEAP  60
VGVKRKRGRP PKNRDGAVVV AAKATAAAKP ARRREDEEEV VCFICFDGGN LVVCDRRGCP  120
KVYHPACIKR EESFFQSRSK WNCGWHICSG CEKAVHYMCY TCTYSVCKVC IKQGKFFSVR  180
GTKGFCDTCF GTILLIESKD GSTKVGVDFD DRNSWEYLFK LYWSDLKGKL SLTLEELTSA  240
KSRWNVPSTY ARKEKDESSD DLYDANNDDD AGSDCSSGKR KRTNSSRKRD RKRQKANSDC  300
SIAAKKVEIA SGDAGSVPKK VPSEGGPSPV DTKWASPELL EFVGHMRDGD QSFISQFDVQ  360
GLLLDYIKQN NLRDPRRKSQ IICDSRLHCL FRKTRVAHFE MLKLLEMHFV VNEASTVNND  420
NQGVINPNSA QIDASGYSDM TAKLCPDRRR THRKMEREPN ANLEDYAAVD MHNINIIYLR  480
RSLMEDLIDD AAFPDKIVGA FVRIRISGVG QKQDMYRLVK VIGTHKVSEK YSIGKKMTNF  540
ALEILNFDKK EIITMDTISN QDFTEGDVQE KAKIFQSARV NDLLNTSEER TRRINEVLEV  600
HADFHMDPDY ESAEEMDDKK SGIYLPEMLM LYFTEVIWHP MDRNLLKFIC IAHWFFAVEL  660
NVNWTRSDAF SSPNKVKYSN TVQNHAHKNS DTSRQPKNLS KQSTICKSGA GRNCENFHSA  720
IGTDIPKSGT NAKSTMCEAA SLSSSGVTLS SEMEPEKVWR YKDPSGNVQG PFTLLQLSKW  780
TSYFPRDLRV WLTFESEERS LLLTEVLSKQ PKDFGQAASV TTSSKPTFAS SGQNGNSTKS  840
TKYSVPERVS VNSLDDRLSL STSSVPPKHA DTLNSQVQYQ TKPSGFPLSP GSPCGQLDLH  900
RDGVQGGHSG EWNNRHSSGG LWSPTMLQTS CSGQSNVESH HNQHATWSQV QHDSKSSLQG  960
GSVKDLNSRP DYSQNLPTQR IKRDVPSPVF AWSPSESRTA SSQHEGSCLS STTNPSIHDD  1020
LHSSLASAKA KSCAPATPVE DRGSSSPSGM LSHSERVPIC SPQPARSASA SEICKMEEVI  1080
NQQKTLEADA SNASVNQSPQ SKISPESSPD NQDVEREYPS PTPRSVSKEP AVDHSGSTSV  1140
APEICKMEEV MNQQKTLEAD ASNASVNQSP QFKISPESSS DNQDIEREYP NPIPRSETES  1200
KEPAVDHSGS TSVAPEICKM EEVMNQQKTL EADASNASVN QSPQFKISPE SSSDNQDIER  1260
EYPNPIPRSE TKEPAVDHSG STSVEPKIFA TKIPDHFPVA FVSPKSGPPT GEIGATESVS  1320
NLEKTYLKGE DSNIKKELCI ESTVVTRENM VVDPALCAES IDVSDVLESL IEQSCGTSYM  1380
DGTAALEDFM TASAEEEPQC SSPIALSPWG EPGYYQGDAV DSALWGVQDD PINDMWSLPS  1440
PTPALQHSSG VETDEKGTAC VVNEVTVTQG NNEIVQRGPT AGEKKVELAN SGASTAWGLV  1500
EQVKSKANDA SVSSIDGSTG VVGWQPSAIK SSNVDTAWST SQNPNLSSSY ETAAPSSRSS  1560
QEASRKQEFT YLNAANSGET LGNAKSWNPS TGNANRGSQR SHPHDRYSQI SESWLLSSNY  1620
SRSSRSGGFG SGGSSRTVPR GQTQRGICKF HESGYCRKGA SCNYVHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000921G0370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0K7S80.0A0A0E0K7S8_ORYPU; Uncharacterized protein
STRINGOPUNC03G00880.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-144nucleic acid binding;zinc ion binding;DNA binding