PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000922G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25311.8 Da    PI: 4.5163
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000922G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1849102456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le+ F++   ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  PH01000922G0150  49 KRRFTEEQVRSLETTFHErRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 102
                      458**************9899********************************9 PP
2HD-ZIP_I/II1201.2e-3847140193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F+e++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ + +++l+e
  PH01000922G0150  47 ERKRRFTEEQVRSLETTFHERRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRAQYDALHARVESLKQEKLTFAAQLEE 140
                      69*****************9999****************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-1740106IPR009057Homeodomain-like
PROSITE profilePS5007117.37843104IPR001356Homeobox domain
SMARTSM003894.0E-1746108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-1949111IPR009057Homeodomain-like
PfamPF000469.5E-1649102IPR001356Homeobox domain
CDDcd000862.21E-1552105No hitNo description
PRINTSPR000315.3E-77584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000315.3E-784100IPR000047Helix-turn-helix motif
PfamPF021832.6E-13104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESDCQFLVE PPQLHQSYAA AVDDGQFLQQ LSGGDATAAG RGAGGGERKR RFTEEQVRSL  60
ETTFHERRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEQDY AALRAQYDAL  120
HARVESLKQE KLTFAAQLEE LREKLNERQD QSGSCDGAEG EDQRNNVSSC LAEEDEAGAA  180
PVTVADVSGD SAAGGYDHFA YGGGLPEPFC ATPELWDTWP LVEWNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000922G0150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-148AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-148AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-148EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152926.11e-106homeobox-leucine zipper protein HOX24-like
RefseqXP_020173935.11e-106homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U11e-99HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A3B6QFX11e-105A0A3B6QFX1_WHEAT; Uncharacterized protein
TrEMBLA0A453P6J11e-105A0A453P6J1_AEGTS; Uncharacterized protein
TrEMBLN1QQN61e-105N1QQN6_AEGTA; Homeobox-leucine zipper protein HOX24
STRINGEMT016761e-106(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-33homeobox 7