PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000930G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 217aa    MW: 22762.8 Da    PI: 8.2397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000930G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000317395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F++   L  H  +H
  PH01000930G0570 73 HRCSVCGKAFRSYQALGGHKASH 95
                     79**********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.2E-137397IPR007087Zinc finger, C2H2
SMARTSM003550.0167395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.30573100IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-97395No hitNo description
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-9129156No hitNo description
PfamPF139122.4E-14133158IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39134156IPR007087Zinc finger, C2H2
SMARTSM003550.099134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALSLEAVLG AAPTASEEEG SEEVQLHCAE GWAKRKRSRR HGHRAPTEDE HLALCLLMLA  60
RGHRAPSPPQ DQHRCSVCGK AFRSYQALGG HKASHRPKPA AATAQAVDER AATALSPAAS  120
SSSSGGGAGT GKVHECSVCK KTFPSGQALG GHKRCHYEGP ISTSAASTSA VVGRGFDLNL  180
PALPDIMSER CMPAAEAEEE EVLSPLAFKK PRLMIPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000930G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932640.0FP093264.1 Phyllostachys edulis cDNA clone: bphyem107a03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562286.13e-76zinc finger protein 1
TrEMBLI1GQB77e-75I1GQB7_BRADI; Uncharacterized protein
STRINGBRADI1G14750.11e-75(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-43salt tolerance zinc finger