PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000941G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 175aa    MW: 18102.3 Da    PI: 9.7943
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000941G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof67.42.2e-2131642962
           zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     Pr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss
  PH01000941G0150 31 PRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSSSS 64
                     9****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.957862IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-73153IPR003851Zinc finger, Dof-type
PfamPF027019.2E-163162IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRRCPPPRPI PTQARQAHLI EIPTTRPKPV PRHFCKSCRR YWTKGGSLRN VPVGGGSRKS  60
SSSSAVPKNA KHSKNSKRRR VAPAPEPAPS TDAATATDAD AATKGTADDP AAPPAVDGGL  120
ADSSVALGLG LTDAGGKDLS DPSPFEWPSG CDLGSDWATG VFADTDPALF LNLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000941G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057599e-36AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBankAP0149659e-36AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126179e-36CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8358909e-36CT835890.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015F07, full insert sequence.
GenBankGQ1835419e-36GQ183541.1 Oryza sativa Japonica Group Dof-type zinc finger protein 15 mRNA, partial cds.
GenBankKC9967339e-36KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957110.17e-47dof zinc finger protein MNB1A
SwissprotP385643e-26MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBLK3ZVZ32e-45K3ZVZ3_SETIT; Uncharacterized protein
STRINGSi030774m3e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.19e-11DOF zinc finger protein 2
Publications ? help Back to Top
  1. Yanagisawa S,Izui K
    Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif.
    J. Biol. Chem., 1993. 268(21): p. 16028-36
    [PMID:8340424]