PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000942G0680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 132aa    MW: 14365 Da    PI: 7.8388
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000942G0680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-3347101155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      ++rlrWt eLHerFv+av+q GG+++AtPk il++m+v+gLt++hvkSHLQkYRl
  PH01000942G0680  47 RQRLRWTDELHERFVDAVTQFGGPDRATPKGILRVMGVQGLTIYHVKSHLQKYRL 101
                      58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.49444104IPR017930Myb domain
SuperFamilySSF466892.06E-1946102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-3246102IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-2648102IPR006447Myb domain, plants
PfamPF002496.6E-1049100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MYEPKPFSSI GSAQNNLISH NQQIEPTANN VVSNGGGDSS NNNFATRQRL RWTDELHERF  60
VDAVTQFGGP DRATPKGILR VMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDNKEL  120
GDLLAGIESS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-2647104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-2647104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-2647104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-2647104158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000942G0680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717311e-113AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563637.11e-75myb family transcription factor PHL7 isoform X2
RefseqXP_014754863.11e-75myb family transcription factor PHL7 isoform X2
RefseqXP_024312887.12e-75myb family transcription factor PHL7 isoform X1
RefseqXP_024312888.11e-75myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW02e-46PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0Q3L3I94e-74A0A0Q3L3I9_BRADI; Uncharacterized protein
TrEMBLI1GXE03e-74I1GXE0_BRADI; Uncharacterized protein
STRINGBRADI1G36236.16e-75(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-47G2-like family protein