PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000943G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 326aa    MW: 34970.8 Da    PI: 7.1668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000943G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13129180155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  PH01000943G0430 129 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 180
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.86E-13127184No hitNo description
SuperFamilySSF474591.83E-17127200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-11129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-14129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAQEAVVFPQ EHIACTAKVA VTMRATSLDC GIDIDELEEK GGVVLQEEAG AMMHGAGATA  60
WVDAAACACS VASGAVKECW DEKQYYPVSP PPPPPVVPPT PAATGHGKAA RRRRRIPKAV  120
KNKEETENQR RNHIAVERNR RRQMNEYLAV LRSVMPPSYA QRGDQASIVA GAINFVKELE  180
QFLQSLEAQK RRAQSPHPAP PFAGFFTFPQ YSAGAGASDN TGSGNGEGGC GAGRGVADIE  240
VAMAESHANV KVLAPRRPRQ LLRMVVALQC LGLTVLHLNV TTTADRLVFY SFSLKIEDEC  300
RLSSVDEIAA AVHQMVVQIA EDCVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130140RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000943G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945520.0FP094552.1 Phyllostachys edulis cDNA clone: bphylf024j19, full insert sequence.
GenBankFP0987390.0FP098739.1 Phyllostachys edulis cDNA clone: bphyst010j12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623907.11e-148transcription factor bHLH94
SwissprotQ9C7T44e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0K5G21e-153A0A0E0K5G2_ORYPU; Uncharacterized protein
STRINGOPUNC02G30580.11e-154(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]