PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000949G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 199aa MW: 20938.5 Da PI: 8.229

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000949G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.1	1.9e-33	75	123	3	51
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPv 51 e lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvP PH01000949G0120 75 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPA 123 56789*******************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	60	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-29	78	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.714	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MIFPPAFLDS SSWNDNQQHV HHQVAASGGG DGNHELLQPS IMPGALPEGG GGPGGPAKPM 60 SMAERARMAR IPLPEPGLKC PRCESTNTKF CYFNNYSLSQ PRHFCRACRR YWTRGGALRN 120 VPAAMAPAPA MAMPGMFHLG LDGDGRGGGG VNGEDGGELH VMPSKREGYP RGGMYGDHLT 180 GYPSYSNTTT GFSGAFGG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000949G0120

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079356	5e-84	AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBank	AK108933	5e-84	AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
GenBank	AP014961	5e-84	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	5e-84	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBank	GQ183552	5e-84	GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140917.1	4e-61	uncharacterized LOC100272994
Swissprot	Q9M2U1	1e-36	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	B4FS72	1e-59	B4FS72_MAIZE; Uncharacterized protein
TrEMBL	K0DG17	1e-59	K0DG17_MAIZE; DOF5 C2C2-DOF type transcription factor (Fragment)
STRING	GRMZM5G880268_P01	2e-60	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	7e-35	Dof family protein