PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000955G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family YABBY
Protein Properties Length: 138aa    MW: 15602.5 Da    PI: 10.4193
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000955G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY130.32.6e-403110890169
            YABBY  90 esastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                       s+s++ +  ++   +n++e++       rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWah+P+ihfg
  PH01000955G0220  31 GSSSSKFRLPMMysAQNDQEQTL----HARPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHYPNIHFG 108
                      34444444444442334444444....38****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.0E-3922108IPR006780YABBY protein
SuperFamilySSF470951.13E-848103IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-556103IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MACRFEKINE NLSKVHSVNG FRDQSGHSEF GSSSSKFRLP MMYSAQNDQE QTLHARPPEK  60
RQRVPSAYNR FIKEEIRRIK TNNPDISHRE AFSTAAKNWA HYPNIHFGPS PGSEGGKKLV  120
DDAIAAPAPK KIQRFYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000955G0220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950311e-142FP095031.1 Phyllostachys edulis cDNA clone: bphyem104o16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.15e-66protein YABBY 6-like isoform X2
SwissprotQ2QM171e-56YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1512e-66A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGPavir.Ca02862.1.p3e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.27e-34YABBY family protein