PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000960G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 89aa    MW: 9854.05 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000960G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-0912531454
                     HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                     d+iN+ +++L++llP++s +  s++ s +  L++++ YIksL
  PH01000960G0260 12 DEINELISKLQSLLPESSrRRASGRSSASNLLKETCSYIKSL 53
                     68**************555999*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.934153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-91277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-61253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-91271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGRRAGRIT DDEINELISK LQSLLPESSR RRASGRSSAS NLLKETCSYI KSLHREVDDL  60
SDRLSELMST MDSNSPQAEI IRSLLRSS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000960G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012761e-147FP101276.1 Phyllostachys edulis cDNA clone: bphylf037m11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613962.15e-44transcription factor ILI3-like
SwissprotA2XD158e-36ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R478e-36ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A0D3HDF71e-42A0A0D3HDF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BA881e-42A0A0E0BA88_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EXJ41e-42A0A0E0EXJ4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QYU41e-42A0A0E0QYU4_ORYRU; Uncharacterized protein
TrEMBLA2Z7291e-42A2Z729_ORYSI; Uncharacterized protein
TrEMBLI1QUB11e-42I1QUB1_ORYGL; Uncharacterized protein
TrEMBLQ8LNC71e-42Q8LNC7_ORYSJ; BHLH family protein, putative, expressed
STRINGOGLUM10G09100.12e-43(Oryza glumipatula)
STRINGOMERI10G06270.12e-43(Oryza meridionalis)
STRINGORUFI10G09690.12e-43(Oryza rufipogon)
STRINGOS10T0403800-002e-43(Oryza sativa)
STRINGORGLA10G0079400.12e-43(Oryza glaberrima)
STRINGOBART10G09290.12e-43(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-25bHLH family protein