PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000974G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 196aa    MW: 20556.1 Da    PI: 8.3446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000974G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000934971123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++F++   L  H  +H
  PH01000974G0380 49 FECKTCSRRFPTFQALGGHRASH 71
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-747124No hitNo description
PfamPF139121.2E-124873IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2814976IPR007087Zinc finger, C2H2
SMARTSM003550.314971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139121.4E-9101126IPR007087Zinc finger, C2H2
SMARTSM003551.3102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSKRYTALEE MESSADTALS QRHGAVGVGD VQYSTRPAGL ARAARVRVFE CKTCSRRFPT  60
FQALGGHRAS HKRPRPHDVG TGLCLGRQPL EAHASVARAR VHGCPVCGVE FAVGQALGGH  120
MRRHRASANA DAHGAGAATP TPTPVKVDDV GDECTGGVCL DLNLTPSENC AEYRNAGIGA  180
AVQSEQRTLL LDCSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000974G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.12e-54zinc finger protein ZAT12-like
TrEMBLA0A2T8KJA45e-53A0A2T8KJA4_9POAL; Uncharacterized protein
STRINGOMERI05G15970.13e-51(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-26C2H2 family protein