PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000983G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 260aa    MW: 28123.5 Da    PI: 9.3467
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000983G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.3e-304699357
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +vrY+eCl+NhAa+lGgh+vDGCgEfmp  +  g+  alkCaAC CHR+FHR++ 
  PH01000983G0460 46 EVRYHECLRNHAAALGGHVVDGCGEFMPG-TGLGDDGALKCAACSCHRSFHRKDD 99
                     79**************************8.4458*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-264798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-164798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-254898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.874998IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.3E-30171239IPR009057Homeodomain-like
SuperFamilySSF466892.96E-19173238IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-25180236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFRGQEPVD KMGVGSTPPL AYTAVLPRTP TPTSSSGNGA GAAPPEVRYH ECLRNHAAAL  60
GGHVVDGCGE FMPGTGLGDD GALKCAACSC HRSFHRKDDG QRRLLPAPAP PPTTPGAAPR  120
VPLLLPPPPH PYAAGHPHAP PFLYHHHTPS GSGGTTTESS SEERGPPSAH AMAQGGQARR  180
KRFRTKFTPE QKEQMLAFAE RVGWRMQKQD EALVEQFCAQ AGVRRQVLKV WMHNNKHNSS  240
SSSSSRMQLQ EQQSQQQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-281812421879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000983G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969680.0FP096968.1 Phyllostachys edulis cDNA clone: bphyst021i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.11e-92zinc-finger homeodomain protein 6-like
SwissprotB8AX536e-86ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0E0DUU54e-92A0A0E0DUU5_9ORYZ; Uncharacterized protein
STRINGPavir.J15638.1.p3e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-37zinc finger homeodomain 1