PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000985G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 133aa    MW: 14848.1 Da    PI: 10.5138
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000985G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.71e-202660135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  PH01000985G0260 26 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 60
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-141959No hitNo description
PROSITE profilePS5011413.312056IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-182080IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-162460IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-152560No hitNo description
PfamPF003201.9E-182660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDSSVEKGSG SLDPDERTAS GEPKACTDCH TTKTPLWRGG PSGPKSLCNA CGIRYRKKRR  60
EALGLDAGEG AEQQQKKKTK REREEVTVEL RMVGFGKEVV LKQRRRMRRR RRLGEEEKAA  120
ILLMALSSGV IYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108QRRRMRR
2104109RRMRRR
3104111RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000985G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0928370.0FP092837.1 Phyllostachys edulis cDNA clone: bphyst009f16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.16e-76GATA transcription factor 16
TrEMBLA0A0E0KL253e-75A0A0E0KL25_ORYPU; Uncharacterized protein
STRINGOPUNC03G36910.16e-76(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-26GATA transcription factor 15