PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000986G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 342aa    MW: 36478.4 Da    PI: 7.0314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000986G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.45.6e-08120139322
                      -SS-EEEEEEE--TT-SS-E CS
             WRKY   3 DgynWrKYGqKevkgsefpr 22 
                      D y+WrKYGqK++ g++f+r
  PH01000986G0410 120 DSYTWRKYGQKDILGAKFAR 139
                      99***************998 PP
2WRKY41.52.7e-131892302259
                      EEEEEE-ST....T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  22 rsYYrCtsa....gCpvkkkversaedpkvveitYegeHnhe 59 
                      rsY++C+++     C++kk+v++s+ dp+v+e+tY g H+++
  PH01000986G0410 189 RSYFKCAHKsdlgCCSAKKQVQQSDADPSVLEVTYIGAHTCD 230
                      9*******98887799************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-22108138IPR003657WRKY domain
SuperFamilySSF1182902.62E-5114139IPR003657WRKY domain
SMARTSM007743.7E-26118231IPR003657WRKY domain
PfamPF031066.9E-5120139IPR003657WRKY domain
PROSITE profilePS5081111.107120232IPR003657WRKY domain
PfamPF031068.1E-13187230IPR003657WRKY domain
SuperFamilySSF1182902.75E-11188232IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-22189232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAGTGGGATT EELLLRGQKS TNQLKALLAN LLPAAEGDGG EKCPAAVEAL LSDISDSLSQ  60
ALASLQFGAS YGQQQLPVLP GQGYLNSGAG GGRRSTSRRC GQRMRDGVCR TIIQQHGDYD  120
SYTWRKYGQK DILGAKFARL RLLTRGLEDF FGPDKNRLKS LFRSNGCPID CGGLGIQDRQ  180
ILGFALRLRS YFKCAHKSDL GCCSAKKQVQ QSDADPSVLE VTYIGAHTCD QPSASRSVPG  240
PISSGAQRTG VHLPPVVPVP TTLQTPEDHR ATDVPTDMAC TPSMEQEQAS LFFVPSPACS  300
QSELLSTEVP QLIAPGDPPV LMELKLIDRH IVVTDSVVPE L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000986G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-13WRKY family protein