PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000988G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 202aa    MW: 20868.9 Da    PI: 8.1485
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000988G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964.1e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     p++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA  r+ +Pv+Gavg++ +++++l+q
  PH01000988G0640   2 SCNGCRVLRKGCSEGCVLRPCLqwidaPDAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQ 95 
                      6*************************999***************************************************************** PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  PH01000988G0640  96 AAVETVLR 103
                      **999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0891107IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDAPD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVET VLRGGAIVPL PELGGGCGAG  120
GDLYGAAKRT GGWSTFSTAK RVRKAEEPTP SCDLGLCLSP GSPAAAGERR ATLRPGTPSM  180
SSDESVTTTG GEREPVLLNL FA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000988G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0976400.0FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650230.11e-125PREDICTED: LOB domain-containing protein 37
SwissprotQ9SN232e-71LBD38_ARATH; LOB domain-containing protein 38
TrEMBLJ3LQ301e-120J3LQ30_ORYBR; Uncharacterized protein
STRINGOB03G31560.11e-120(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-70LOB domain-containing protein 38