PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000994G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 300aa    MW: 32558.5 Da    PI: 8.7476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000994G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-061834319
                     S---SGGGGTS--TTTT CS
          zf-CCCH  3 telCrffartGtCkyGd 19
                     +++C +++rtG+Ck+G+
  PH01000994G0360 18 EKECAYYLRTGQCKFGS 34
                     679*************8 PP
2zf-CCCH40.74.1e-13165190227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  PH01000994G0360 165 DQPECQFYMKTGDCKFGALCKFHHPK 190
                      689*********************96 PP
3zf-CCCH39.11.3e-12210236127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  PH01000994G0360 210 PGEPICTFYSRYGICKFGPNCKFDHPM 236
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.1271534IPR000571Zinc finger, CCCH-type
SMARTSM00356281536IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122163191IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6166191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4169190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6208235IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178209237IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10211236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4214234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MATRVQLNVL GYPLRPNEKE CAYYLRTGQC KFGSTLRGSV YSPGQSATSP GQHTYPGAIT  60
NWPLSRSASF IASPRWPGHS SYAQVIVPPG LVQVPGWNPY AAQLGSSSSD DQQRTSGAAQ  120
YYTGSRQSET HGMGDQGIFS SYQAGSVPVG LYAVQRENIF PERPDQPECQ FYMKTGDCKF  180
GALCKFHHPK ERIIPTPNCA VSPLGLPLRP GEPICTFYSR YGICKFGPNC KFDHPMGTVM  240
YGLATSPIGE VPTARRMLAP VPAHSEVSPD NGSGRSRRIT HSDSQQITSG ERSTEREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000994G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951930.0FP095193.1 Phyllostachys edulis cDNA clone: bphylf048f08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662931.10.0PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9XRZ10.0A0A0D9XRZ1_9ORYZ; Uncharacterized protein
STRINGOB11G20340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-87zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]