PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001003G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 408aa    MW: 43136.9 Da    PI: 7.9871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001003G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05193216123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg++ s + +L+ H+ + H
  PH01001003G0540 193 FPCKVCGEVLSKPQQLELHQAMkH 216
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.0E-5263406IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.95E-10267407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGSGSCSSLL RGFVSLLFLF FFHIGHAGSC FSPGSAAQPQ EEDDAAHDAD GKGGGVGGIK  60
RRKMSPLAFS PAASSSTVVD ERVRARRRQV SSLATNLRFY LHRIFSSSTS GAKNAVPAAE  120
EEEAMTTTVS SPLAQSLPQP QASVVLSTPS SPFLSPLSPQ SLSITPVPSS PQKQLPQASR  180
QSYRSFAARG DVFPCKVCGE VLSKPQQLEL HQAMKHSLSE LSHLDSSMNI IRYTTAPERS  240
PASRSTATSS APAPPPPAPG GAVVEERCIA DGNERLRFHC STMLCSLGAG VCGSPYCCTC  300
SILRHGFAGK QADVDGIATY SSGWAAHVSL PEDVEREFAF MQVRRAMLVC RVVAGRVGRG  360
AADDKVAYDS MVPVLPSGGG SRVEDDVELL VFNPRAVLPC FVIIYTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001003G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318151e-161AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLA0A0D9Z5240.0A0A0D9Z524_9ORYZ; Uncharacterized protein
STRINGOGLUM03G11560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-37C2H2 family protein