PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001004G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 243aa    MW: 25617.4 Da    PI: 6.7853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001004G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31133190259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  PH01001004G0240 133 EDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCHVKKRVERERDDARFVITTYDGVHNHP 190
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-33119192IPR003657WRKY domain
SuperFamilySSF1182901.31E-27125192IPR003657WRKY domain
PROSITE profilePS5081132.845127192IPR003657WRKY domain
SMARTSM007741.1E-35132191IPR003657WRKY domain
PfamPF031064.5E-24133190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSLYSSLLSL SPVDGDVAAA VSSYLSFDID VSEEYYPPEA AAAAFHPEQQ APGPLLASLQ  60
GTDDYKNGEL TGSGAGTGES SKQSNLEVGV LISDGPSGHD KIDKGSSTAG GGGARSKGSK  120
IAFKTRSAVD VLEDGYRWRK YGKKMVKNSP NPRNYYRCSS EGCHVKKRVE RERDDARFVI  180
TTYDGVHNHP APLPPRGCAG YSLALGQPQG QRVEEESQSM GGRCFVDMKP HAAGAGGLAS  240
QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-25119192174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001004G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274034e-97KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBankKT7289094e-97KT728909.1 Triticum aestivum clone LKc001 WRKY protein mRNA, partial cds.
GenBankKT7289104e-97KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBankKT8658774e-97KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBankKT8658784e-97KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566817.12e-67probable WRKY transcription factor 75
TrEMBLA0A140DMX57e-67A0A140DMX5_WHEAT; WRKY protein (Fragment)
STRINGTraes_3B_E408A7B56.19e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-36WRKY DNA-binding protein 50