PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001006G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 252aa    MW: 28099.3 Da    PI: 8.3591
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001006G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41.1e-301871255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     pr++Wt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++hvkSHLQ+YR+
  PH01001006G0170 18 PRMQWTEELHRQFVEAVEWLGGQDEATPKRILQLMGVKGVSISHVKSHLQMYRS 71
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-281473IPR009057Homeodomain-like
PROSITE profilePS5129413.1321474IPR017930Myb domain
TIGRFAMsTIGR015573.1E-241871IPR006447Myb domain, plants
SuperFamilySSF466899.86E-171872IPR009057Homeodomain-like
PfamPF002491.4E-81970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRGFERRGVR QYNRSGVPRM QWTEELHRQF VEAVEWLGGQ DEATPKRILQ LMGVKGVSIS  60
HVKSHLQMYR SNSSNNSNDL VNLHKLMATT ASNINKRVFV NREDHCVFES QNGNTAASDK  120
NAHTMLRSSH SSSYQLPSIE EVFRSWERSR GRLPWNSNLL TTEKAIRPCH TTNKKPQKQT  180
DCDLTLSIGM WEETSCDADG SSTISEELAA PSRNEGFGSP AAGGHHFAAT VKESNLPALN  240
LDLTISSSWL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-161671156Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001006G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966301.11e-115uncharacterized protein LOC101769616
TrEMBLA0A0E0LEI81e-116A0A0E0LEI8_ORYPU; Uncharacterized protein
STRINGOPUNC06G22010.11e-117(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-25G2-like family protein