PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001006G0380

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 351aa MW: 38088.2 Da PI: 9.7781

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001006G0380	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.1	8.3e-13	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky PH01001006G0380 65 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 109 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-16	59	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.628	60	114	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.3E-18	63	112	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.6E-6	64	105	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-10	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-10	65	109	IPR001005	SANT/Myb domain
CDD	cd00167	9.27E-8	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSTTPKPFDA AAAVAGGGGG GGEGGGGKQQ QQAVVVAPPP MAVPAPAAEE EVRKVRKPYT 60 ITKSRESWTE PEHDKFLEAL QLFDRDWKKI EAYVGSKTVI QIRSHAQKYF LKVQKNGTCE 120 HLPPPRPKRK AAHPYPQKAS KNVSQAVLSQ QPLPLREQGC VMSMDTSTDV RNANANAVVP 180 SWDNALVQPV SASHTPAMPD FAQVYNFLGS IFDPDTSGHL QRLKAMDPID VETPRKPKVW 240 NDANAAPNSK QHSLNKAHNS PQNMQQQYKS IKPLNIAPTP KPGTINHSSL DNAPAVPVLL 300 LMRNLSMNLT SPDFEAHRKL LSSHSSGGDQ IKSEGMENLG SPQSCHLPFM *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSTTPKPFDA AAAVAGGGGG GGEGGGGKQQ QQAVVVAPPP MAVPAPAAEE EVRKVRKPYT  60
ITKSRESWTE PEHDKFLEAL QLFDRDWKKI EAYVGSKTVI QIRSHAQKYF LKVQKNGTCE  120
HLPPPRPKRK AAHPYPQKAS KNVSQAVLSQ QPLPLREQGC VMSMDTSTDV RNANANAVVP  180
SWDNALVQPV SASHTPAMPD FAQVYNFLGS IFDPDTSGHL QRLKAMDPID VETPRKPKVW  240
NDANAAPNSK QHSLNKAHNS PQNMQQQYKS IKPLNIAPTP KPGTINHSSL DNAPAVPVLL  300
LMRNLSMNLT SPDFEAHRKL LSSHSSGGDQ IKSEGMENLG SPQSCHLPFM *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001006G0380

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369412	1e-112	AK369412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2090M12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656359.1	1e-134	PREDICTED: protein REVEILLE 6-like isoform X3
Swissprot	Q8RWU3	1e-70	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	J3MGQ6	1e-132	J3MGQ6_ORYBR; Uncharacterized protein
STRING	OB06G32000.1	1e-133	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	3e-57	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]