PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001018G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 222aa    MW: 25238.5 Da    PI: 9.5614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001018G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1199140351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  PH01001018G0090  99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 140
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.59781153IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-898143IPR016177DNA-binding domain
SMARTSM003801.3E-498155IPR001471AP2/ERF domain
PfamPF008477.0E-698141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-6101145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSLP VDLPKPIENE KTVEVAHSNV KPFSVHPLPL TKTSDVLPES  60
SNGSDSLKED KNQYFPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI  120
HLGTVGTQDE AARLYDRAAF MCGREPNFEL SEEEKNELQK YTWDDFLALT RNTITSKKQR  180
KVGLLRRNKA DLFVGQSDGD TEMVNGGGSS HSEDGDVDTS PS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001018G0090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0970300.0FP097030.1 Phyllostachys edulis cDNA clone: bphylf029i17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151501.11e-138uncharacterized protein LOC100285135
TrEMBLC0P9B01e-137C0P9B0_MAIZE; Ethylene-responsive transcription factor-like protein
STRINGOB02G25330.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.23e-46ERF family protein