PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001036G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 336aa    MW: 35530.8 Da    PI: 7.3437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001036G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-17163217256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PH01001036G0340 163 RKKLRLSKEQSAFLEESFKEHITLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 217
                      788899***********************************************98 PP
2HD-ZIP_I/II125.91.8e-40163253192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  PH01001036G0340 163 RKKLRLSKEQSAFLEESFKEHITLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 253
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-17149213IPR009057Homeodomain-like
SuperFamilySSF466893.89E-18153220IPR009057Homeodomain-like
PROSITE profilePS5007116.746159219IPR001356Homeobox domain
SMARTSM003891.1E-14161223IPR001356Homeobox domain
CDDcd000864.78E-15163220No hitNo description
PfamPF000461.2E-14163217IPR001356Homeobox domain
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
SMARTSM003401.4E-24219262IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10219253IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADAGRELVL GLGVGVGIRR EEVERGRRDQ EVAAARRELE LGARRCGSSP EPTVRLTLLP  60
LVPSLGLPWP SESRHLEAST RGFDVNQAPS SVGPCAADEE QEDTAAAGAA LSSSPNNSAG  120
SFPTDFCAQG GIGASDAAPG AGGADADRSC SRASDEDDGG SARKKLRLSK EQSAFLEESF  180
KEHITLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR  240
RLQKELAELR ALKTVHPFYM HLPATTLSMC PSCERVASNS ASAAAAAPAS APGTAPTAGG  300
IAATAPEHRP SSFAALFSSP RSFSLVAQPQ PPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211219RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001036G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-178BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-178KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.11e-144homeobox-leucine zipper protein HOX11
RefseqXP_015696371.11e-145PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-146HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3B6LN471e-155A0A3B6LN47_WHEAT; Uncharacterized protein
STRINGTraes_5BL_4A3874701.11e-156(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-63homeobox from Arabidopsis thaliana