PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001037G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 506aa    MW: 54107.5 Da    PI: 6.5156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001037G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.6e-33181238260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g+Hnh+k
  PH01001037G0370 181 DDGYNWRKYGQKQMKGSENPRSYYKCSFSGCPAKKKVERSP-DGQVTEIVYKGTHNHPK 238
                      8****************************************.***************85 PP
2WRKY97.49.6e-31344402159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg++++rsYY+Ct+a+C+v+k ver+++dp++v++tY g+Hnh+
  PH01001037G0370 344 LDDGYRWRKYGQKVVKGNPNARSYYKCTTARCSVRKYVERASHDPRAVITTYGGKHNHD 402
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-30171239IPR003657WRKY domain
SuperFamilySSF1182906.8E-26176239IPR003657WRKY domain
SMARTSM007741.5E-36180238IPR003657WRKY domain
PfamPF031061.4E-26181237IPR003657WRKY domain
PROSITE profilePS5081124.363181239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34329404IPR003657WRKY domain
SuperFamilySSF1182901.29E-27336404IPR003657WRKY domain
PROSITE profilePS5081135.485339404IPR003657WRKY domain
SMARTSM007741.4E-33344403IPR003657WRKY domain
PfamPF031062.5E-23345402IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MTPSSLPLSL PPASPSACFN MPSGFLDSPI LLTPSLFPSP TTGAFPSQPF NWMGTLENLQ  60
GSVKDEQRQH SDFTFQTTAS VPTTMTGITT TAPSSFQQSS MLMAPLGGDS YNGEQQQPWS  120
YQEPSMDAAT RPADFMMPFE ATSSGITAAL TMAHDMIGNG GYNSMSGAGA FREQQSRRPS  180
DDGYNWRKYG QKQMKGSENP RSYYKCSFSG CPAKKKVERS PDGQVTEIVY KGTHNHPKPQ  240
NPRRGSGSAP YALQGANDAS ADALSGTPVA TPENSSASFG DDEINGVSSP LVGNAGGGEE  300
FDDDEPDSKK WRKDGDGEGI SLAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG  360
NPNARSYYKC TTARCSVRKY VERASHDPRA VITTYGGKHN HDVPAARGNA ALYRAAPPAT  420
GNACTRPTAP AASYLHGSGG GYSGFGAVQQ GAFGGLDGGA SGFALSGFDY PTGTSYSYTS  480
QQQQQNDAMF YASRTKDEPR DIFFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33181405878Probable WRKY transcription factor 4
2lex_A2e-33181405878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001037G0370
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981840.0DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-152WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5UYK50.0A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-87WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]