PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001038G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 152aa    MW: 16731 Da    PI: 8.6842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001038G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000254365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+ F++   L  H  +H
  PH01001038G0420 43 FVCKTCGRAFTSFQALGGHRTSH 65
                     89**********99998888777 PP
2zf-C2H211.40.0009992114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cg  F     L  H+r+H
  PH01001038G0420  92 HDCHICGLGFEMGQALGGHMRRH 114
                      56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-43866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-743114No hitNo description
PfamPF139125.8E-104367IPR007087Zinc finger, C2H2
SMARTSM003550.214365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8454370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139121.0E-992117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.61992119IPR007087Zinc finger, C2H2
SMARTSM003551.892114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKHLREEEVS LALALSTDSS ESELAAKKAR RRPVAATSGE GEFVCKTCGR AFTSFQALGG  60
HRTSHLRGRN GLELGVGSRA MRQHKVYKKR QHDCHICGLG FEMGQALGGH MRRHREEMSN  120
ADDWVWRSVA LPEEVAAGHA AAEPPVLLEL FA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001038G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1001750.0FP100175.1 Phyllostachys edulis cDNA clone: bphyem123g23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.18e-65zinc finger protein ZAT8-like
TrEMBLA0A3B6N2832e-63A0A3B6N283_WHEAT; Uncharacterized protein
STRINGPavir.J00894.1.p4e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-22C2H2 family protein