PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001038G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 137aa    MW: 14525.8 Da    PI: 10.3954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001038G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000295117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F     L  H+r+H
  PH01001038G0430  95 HQCHICGLGFEMGQALGGHMRRH 117
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.964062IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-104064IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-64062No hitNo description
PROSITE profilePS501579.934067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-690117No hitNo description
PROSITE profilePS501579.74395122IPR007087Zinc finger, C2H2
SMARTSM003550.2695117IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-1095120IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MKHPRDDDVC LSLSLTLGAA AGRKRLRRGT AGGGGEAGEF VCKTCSRAFA SFQALGGHRT  60
SHLRGRHGLA LGLAAETRMK GPAKKQLEKP AAASHQCHIC GLGFEMGQAL GGHMRRHREE  120
AAAEIPHAPP VLLELFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001038G0430
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1013810.0FP101381.1 Phyllostachys edulis cDNA clone: bphyem106p21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.12e-48zinc finger protein ZAT8-like
RefseqXP_020199617.12e-48zinc finger protein ZAT8-like
SwissprotQ9LX854e-22ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3B6KT012e-51A0A3B6KT01_WHEAT; Uncharacterized protein
STRINGTraes_5BL_B038BE0A3.11e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-11C2H2 family protein