PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001038G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 272aa    MW: 27978.3 Da    PI: 8.7474
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001038G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1001.5e-31100147249
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnv 49 
                      +e  lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrn+
  PH01001038G0580 100 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNI 147
                      56789******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3184147IPR003851Zinc finger, Dof-type
PfamPF027011.7E-27104147IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.884104158IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWNQQQQ QQAHHGQLPS GGGGGGVDAH AHHHQQHQLP PVPPPGALMA  60
PRPDMAAAVA VSGGGGPTGG SAVRLGSMTE RARLAKIPQP EPGLKCPRCE STNTKFCYFN  120
NYSLSQPRHF CKTCRRYWTR GGALRNIQQF PFLSRTDAMP PPMSGIYQFD AEGAADAAGF  180
AGQMLAGSKV PGSVGLITQL ASVKMEDNPP STAMTSASPR EFLGLPGNLQ FWGGGNGAGG  240
NGGSASGGAV APGGGWADLS GFNSSSSGNI L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001038G0580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044332e-84AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAP0149592e-84AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-84CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143068.12e-63Dof zinc finger protein DOF3.6
RefseqXP_008669607.12e-63dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U16e-37DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLB6SV344e-62B6SV34_MAIZE; Dof zinc finger protein DOF3.6
TrEMBLK0DCL04e-62K0DCL0_MAIZE; DOF27 transcription factor (Fragment)
STRINGGRMZM2G144188_P018e-67(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.16e-35OBF-binding protein 3