PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001042G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 334aa    MW: 35068.2 Da    PI: 5.3598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001042G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-06206251454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      a n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  PH01001042G0210 206 ATNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 251
                      679***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-12200260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.57202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-8206260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-5208256No hitNo description
SMARTSM003531.3E-5208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAIDRFLYIE NEQASDPGPL PSQLSPSLSN LVQFSQHSES VCVSASQYQL EIMVKEEEII  60
AEAGGGRGYT DMLGLGEEPD YFLCLSPSSY LSSSAVSTTT SAAPTAASPT CASYLAPPPY  120
HHILSFSGQA EQCHGGDLFG FQYYGGDHAI PVVVPQKSSP TTECCSSISS MSSSPTATAI  180
SSSKPQAFKK KGSRGGDQRK TAYAAATNKR PRVRRERLGE RIIALQQLVS PFGKSDTASV  240
LHEALGYIRF LHDQVQVQES AAGVVVEPRP SDLRSRGLCL VPISCTEHVA GDGNGNGADI  300
WSVVAGLAGA TAAAEENKEA GALLRGDLPG QLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001042G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935860.0FP093586.1 Phyllostachys edulis cDNA clone: bphylf056b12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690492.11e-131PREDICTED: transcription factor bHLH110-like
RefseqXP_015690493.11e-131PREDICTED: transcription factor bHLH110-like
TrEMBLJ3LT121e-132J3LT12_ORYBR; Uncharacterized protein
STRINGOB03G41880.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-24bHLH family protein