PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001048G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 610aa    MW: 65019.9 Da    PI: 5.8024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001048G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-055072123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F r  nL+ H r H
  PH01001048G0050 50 FVCEVCGKGFQRDQNLQLHRRGH 72
                     89*******************88 PP
2zf-C2H2163.5e-05129150223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       Cp Cgk++  + +Lk H +t+
  PH01001048G0050 129 ACPRCGKRYAVQADLKAHAKTC 150
                      6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-84972No hitNo description
PROSITE profilePS5015711.6355072IPR007087Zinc finger, C2H2
SMARTSM003550.0145072IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-55072IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003558593123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-8123148No hitNo description
PROSITE profilePS501578.663128156IPR007087Zinc finger, C2H2
SMARTSM0035590128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MPPNPTEPEQ AEAAPAPEPA KKKRNLPGTP DPDAEVIALS PGALLTTNRF VCEVCGKGFQ  60
RDQNLQLHRR GHNLPWRLRR RGPGAAAPRR RVYVCPEPGC VHHSPARALG DLTGIKKHFC  120
RKHGEKRWAC PRCGKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV THRAFCGALV  180
EETGGVLAVP APPSPRPPDL EAEENVDKDK EKGEEEENEN SAVAEVDGLQ RGEAVTEEPQ  240
LRLPSQSPPL PQEQQPLVAV VPNVDEPEVV AEPTVDAKQE VEDNRDEHIC FKEADQYKDA  300
ELEDSNLPDN DTPMLPCFLP SPSEAIVTDG SSTSCGAGSS ASNSIAPPAT TTSTFAGLFA  360
SVTTSTTPQS RSLRDLIGVD PTFLCLAIGA PSLFPQTNTS NPCTFAPPPA PHMSATALLQ  420
KAAEVGASQS SSSFLKEFGL ASSSSSTPSK PPQGRFTHNS PPSKLPQGRF TDSSPPSKLP  480
QGRFTDSSPP SKLPQGRFID NSAQQWHHRS NQLMDMEPGP MLSGGLGLGL AYDSGNAALP  540
DLMMGPSPLF GPKPATLDFL GLGIGETMGG STPNGGLPAL MVGGELDMGS AQAPSPWEEA  600
KRKANGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-29124182361Zinc finger protein JACKDAW
5b3h_F9e-29124182361Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001048G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983990.0FP098399.1 Phyllostachys edulis cDNA clone: bphyem204a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234246.20.0protein indeterminate-domain 1 isoform X1
TrEMBLA0A0D9X0T30.0A0A0D9X0T3_9ORYZ; Uncharacterized protein
STRINGLPERR07G17330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.17e-86C2H2-like zinc finger protein