PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001048G0540

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

BES1

Protein Properties

Length: 339aa MW: 37847.2 Da PI: 9.6623

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001048G0540	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	210.5	4.3e-65	10	152	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 g gr+ptwkErEnnkrRERrRRaiaaki++GLRa Gn+klpk++DnneVlk LcreAGwvvedDGttyrkg+kp+ + + + +sa +sp+ss+ PH01001048G0540 10 GVGRTPTWKERENNKRRERRRRAIAAKIFTGLRALGNFKLPKHCDNNEVLKELCREAGWVVEDDGTTYRKGCKPPpSVPVCGAASAGMSPCSSS 103 569**********************************************************************788888889999***** PP DUF822 95 q.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 q +s+ ss+++spv+sy+asp+sssfpsp++ld+ s ++llp+l+ l++ PH01001048G0540 104 QlLSAPSSSFPSPVPSYHASPASSSFPSPTRLDNPSP---SCLLPFLRGLPN 152 9*****************************99844...578887776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-61	11	137	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MTSGPAAAEG VGRTPTWKER ENNKRRERRR RAIAAKIFTG LRALGNFKLP KHCDNNEVLK 60 ELCREAGWVV EDDGTTYRKG CKPPPSVPVC GAASAGMSPC SSSQLLSAPS SSFPSPVPSY 120 HASPASSSFP SPTRLDNPSP SCLLPFLRGL PNLPPLRVSS SAPVTPPLSS PTASRPPKVR 180 KPDWDVDPFR HPFFAVSAPA SPTRGRRLEH PDTIPECDES DVSTFTMGAS IHRDCKSMSM 240 QVQILHHQSN TIVKRWHVCL KHEDLSYWRP LFMVRKLKMV RKFTLSFSRL PYGNFLFAYF 300 WDLPSFELER CRLHLENQDD DFVSTTNQAS VAHIYMWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-24	13	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-24	13	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-24	13	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-24	13	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid biosynthetic genes. May act as transcriptional repressor by binding the brassinosteroid-response element (5'-CGTGCG-3') in the promoter of GRAS32 (AC Q9LWU9), another positive regulator of brassinosteroid signaling (By similarity). {ECO:0000250}.
UniProt	Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269\|PubMed:17699623, ECO:0000269\|PubMed:19220793, ECO:0000269\|PubMed:22570626}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001048G0540

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269\|PubMed:22570626}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354370	0.0	AK354370.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N24.
GenBank	AK359453	0.0	AK359453.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645123.1	1e-104	protein BZR1 homolog 1
Swissprot	B8B7S5	1e-105	BZR1_ORYSI; Protein BZR1 homolog 1
Swissprot	Q7XI96	1e-105	BZR1_ORYSJ; Protein BZR1 homolog 1
TrEMBL	A0A446M3E3	1e-104	A0A446M3E3_TRITD; Uncharacterized protein
STRING	OS07T0580500-01	1e-104	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5474	34	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.3	3e-46	BES1 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Tong H, et al. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell, 2012. 24(6): p. 2562-77 [PMID:22685166]