PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001057G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WOX
Protein Properties Length: 263aa    MW: 27839.5 Da    PI: 7.9958
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001057G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-20867357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql +Le++++   r+p+ ++++++A++l    +++ ++V++WFqN++a++++
  PH01001057G0130  8 TRWCPTPEQLMILEDMYRGgLRTPNSSQIQQIAAHLafygRIEGKNVFYWFQNHKARDRQ 67
                     8*****************99*************************************996 PP
2Wus_type_Homeobox116.51.3e-37768364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +tRW+PtpeQ++iLe++y+ GlrtPn+++iq+i+a+L+ yG+ie+kNVfyWFQN+kaR+rqk
    PH01001057G0130  7 STRWCPTPEQLMILEDMYRGGLRTPNSSQIQQIAAHLAFYGRIEGKNVFYWFQNHKARDRQK 68
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.511368IPR001356Homeobox domain
SuperFamilySSF466891.15E-11371IPR009057Homeodomain-like
SMARTSM003891.7E-4572IPR001356Homeobox domain
PfamPF000466.0E-18867IPR001356Homeobox domain
CDDcd000863.69E-6868No hitNo description
Gene3DG3DSA:1.10.10.601.1E-7967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPSQGGSTRW CPTPEQLMIL EDMYRGGLRT PNSSQIQQIA AHLAFYGRIE GKNVFYWFQN  60
HKARDRQKLR RRLCMSHHFL SCAHYYAAAA AAGQQQQQLL GTAAIAGAPP PLCTPPPAPH  120
YSCLDQQAAA AHLTTAPAAA YTSYYYPFGA APASRCTAGA GATPSPPNPL LQYQGGGGRG  180
VLPEAIGRPE YSLGKLGNFG VVEDTSGCPA STVVDIPPPS GYEAAMEAAG EAMSAPSTAF  240
CRPLKTLDLF PGGLKEEQRD VV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001057G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401847e-96BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269467e-96KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.13e-88putative WUSCHEL-related homeobox 2
TrEMBLR7VZP37e-87R7VZP3_AEGTA; Putative WUSCHEL-related homeobox 2
STRINGEMT015481e-87(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-40WOX family protein