PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001058G0600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WOX
Protein Properties Length: 218aa    MW: 24273.9 Da    PI: 9.4752
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001058G0600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-2082141357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++++eq+++Le l++   r+p+a ++e+++++l    +++ ++V++WFqN++a+e++
  PH01001058G0600  82 TRWNPSPEQIKVLEMLYRGgMRTPNALQIERITEELgkygRIEGKNVFYWFQNHKARERQ 141
                      8*****************99**************************************97 PP
2Wus_type_Homeobox116.99e-3881143365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P+peQik+Le+ly+ G+rtPn+ +i+rit+eL +yG+ie+kNVfyWFQN+kaRerqkq
    PH01001058G0600  81 TTRWNPSPEQIKVLEMLYRGGMRTPNALQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 143
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.99377142IPR001356Homeobox domain
SMARTSM003894.8E-779146IPR001356Homeobox domain
SuperFamilySSF466899.84E-1380147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-782141IPR009057Homeodomain-like
PfamPF000461.4E-1782141IPR001356Homeobox domain
CDDcd000861.38E-582143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRFQHLHVAY LEKAASSSSP PSISPSFPSS TFPFAFQCLL PLAPKISFPE PKKMIAPPDF  60
GRVRNASKLL NCTVQVPTAG TTRWNPSPEQ IKVLEMLYRG GMRTPNALQI ERITEELGKY  120
GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTLDSSALP QTKDGAEKME VYCDDVASCK  180
RRCKTWGDGH GDAATEVADC TDDVTLELFP LRPRGKA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001058G0600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8361591e-112JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-108WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-105WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-105WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A453D7W41e-107A0A453D7W4_AEGTS; Uncharacterized protein
TrEMBLM8BW891e-107M8BW89_AEGTA; WUSCHEL-related homeobox 4
STRINGEMT292551e-108(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-40WUSCHEL related homeobox 4