PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001065G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 270aa    MW: 28616.8 Da    PI: 8.6384
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001065G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31127182156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k r++W+peLH+rFv a+++LGG + AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PH01001065G0270 127 KSRRCWSPELHRRFVAALQRLGGLQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 182
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.56124184IPR017930Myb domain
SuperFamilySSF466891.19E-17125185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-29125185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26127182IPR006447Myb domain, plants
PfamPF002494.4E-7129180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGSSVQKEAG GGGVDLRLLA ARTVTDSLRA AVSRSSAGEK AARFEECIRS LEAEKAKMEV  60
SNAFMPLNGL PTFSKSPEKP EKATMPVPDL SLSSPAIDAP CPAAAPSANS SAITDARAQR  120
QQPVQRKSRR CWSPELHRRF VAALQRLGGL QAATPKQIRE LMKVDGLTND EVKSHLQKYR  180
LHTRRASDGH QQVSASLWPP PEQYTTSQHS TSQSGSPQGP LQLTGSSRGG AVSATAGDSC  240
EGGEGEEEDG KSESYSWEMQ NGAKALSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13127180154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13127180154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13127180154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13127180154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001065G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.18e-91myb family transcription factor EFM-like
TrEMBLA0A446SR033e-93A0A446SR03_TRITD; Uncharacterized protein
STRINGTraes_5DS_13C2391DC.15e-92(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-28G2-like family protein