PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001065G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 232aa    MW: 24172.3 Da    PI: 7.4763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001065G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006485107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F +   L  H  +H
  PH01001065G0460  85 HRCSVCGKAFASYQALGGHKASH 107
                      79**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-1085107No hitNo description
PfamPF139125.2E-1385109IPR007087Zinc finger, C2H2
PROSITE profilePS501579.97285107IPR007087Zinc finger, C2H2
SMARTSM003550.02385107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-10142169No hitNo description
PfamPF139123.7E-13146171IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307147169IPR007087Zinc finger, C2H2
SMARTSM003550.21147169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAVEAVLEAA VIPSPPSRTR EMAAAACNDE ESTVQHVEGW AKRKRSRRQR ALEPTEEEYL  60
ALCLLMLASG HRGDVRVPEP AAAEHRCSVC GKAFASYQAL GGHKASHRKP LAPAPAAGAE  120
EPQATAPSSS AVSSSGSGEA GTGSKVHECN VCRKTFPTGQ ALGGHKRCHY DGTIGSAAAG  180
PKAAAAATNT GRAFDLNLPA LPDIAERCTA EAEEEDVLSP LAFKKPRLMI PA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001065G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925900.0FP092590.1 Phyllostachys edulis cDNA clone: bphyem120h18, full insert sequence.
GenBankFP1003640.0FP100364.1 Phyllostachys edulis cDNA clone: bphylf036a08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150049.11e-78zinc finger protein 1-like
SwissprotQ424301e-46ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3B6MLT22e-77A0A3B6MLT2_WHEAT; Uncharacterized protein
STRINGMLOC_54674.19e-73(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-39salt tolerance zinc finger